• ActiveLoop
    • Products
      Products
      🔍
      Deep Research
      🌊
      Deep Lake
      Solutions
      Industries
      • agriculture
        Agriculture
      • audio proccesing
        Audio Processing
      • autonomous_vehicles
        Autonomous & Robotics
      • biomedical_healthcare
        Biomedical & Healthcare
      • multimedia
        Multimedia
      • safety_security
        Safety & Security
      Case Studies
      Enterprises
      BayerBiomedical

      Chat with X-Rays. Bye-bye, SQL

      MatterportMultimedia

      Cut data prep time by up to 80%

      Flagship PioneeringBiomedical

      +18% more accurate RAG

      MedTechMedTech

      Fast AI search on 40M+ docs

      Generative AI
      Hercules AIMultimedia

      100x faster queries

      SweepGenAI

      Serverless DB for code assistant

      Ask RogerGenAI

      RAG for multi-modal AI assistant

      Startups
      IntelinairAgriculture

      -50% lower GPU costs & 3x faster

      EarthshotAgriculture

      5x faster with 4x less resources

      UbenwaAudio

      2x faster data preparation

      Tiny MileRobotics

      +19.5% in model accuracy

      Company
      Company
      about
      About
      Learn about our company, its members, and our vision
      Contact Us
      Contact Us
      Get all of your questions answered by our team
      Careers
      Careers
      Build cool things that matter. From anywhere
      Docs
      Resources
      Resources
      blog
      Blog
      Opinion pieces & technology articles
      langchain
      LangChain
      LangChain how-tos with Deep Lake Vector DB
      tutorials
      Tutorials
      Learn how to use Activeloop stack
      glossary
      Glossary
      Top 1000 ML terms explained
      news
      News
      Track company's major milestones
      release notes
      Release Notes
      See what's new?
      Academic Paper
      Deep Lake Academic Paper
      Read the academic paper published in CIDR 2023
      White p\Paper
      Deep Lake White Paper
      See how your company can benefit from Deep Lake
      Free GenAI CoursesSee all
      LangChain & Vector DBs in Production
      LangChain & Vector DBs in Production
      Take AI apps to production
      Train & Fine Tune LLMs
      Train & Fine Tune LLMs
      LLMs from scratch with every method
      Build RAG apps with LlamaIndex & LangChain
      Build RAG apps with LlamaIndex & LangChain
      Advanced retrieval strategies on multi-modal data
      Pricing
    • Sign In
  • Book a Demo
    • Back
    • Share:

    MCC

    Matthews Correlation Coefficient (MCC) evaluates binary classifier performance in machine learning, with insights into its applications and challenges.

    MCC takes into account all four entries of a confusion matrix (true positives, true negatives, false positives, and false negatives), providing a more representative picture of classifier performance compared to other metrics like F1 score, which ignores true negatives. However, in some cases, such as object detection problems, measuring true negatives can be intractable. Recent research has investigated the relationship between MCC and other metrics, such as the Fowlkes-Mallows (FM) score, as the number of true negatives approaches infinity.

    Arxiv papers on MCC have explored its application in various domains, including protein gamma-turn prediction, software defect prediction, and medical image analysis. These studies have demonstrated the effectiveness of MCC in evaluating classifier performance and guiding the development of improved models.

    Three practical applications of MCC include:

    1. Protein gamma-turn prediction: A deep inception capsule network was developed for gamma-turn prediction, achieving an MCC of 0.45, significantly outperforming previous methods.

    2. Software defect prediction: A systematic review found that using MCC instead of the biased F1 metric led to more reliable empirical results in software defect prediction studies.

    3. Medical image analysis: A vision transformer model for chest X-ray and gastrointestinal image classification achieved high MCC scores, outperforming various CNN models.

    A company case study in the field of healthcare data analysis utilized distributed stratified locality sensitive hashing for critical event prediction in the cloud. The system demonstrated a 21x speedup in the number of comparisons compared to parallel exhaustive search, at the cost of a 10% MCC loss.

    In conclusion, MCC is a valuable metric for evaluating binary classifiers, offering insights into their performance and guiding the development of improved models. Its applications span various domains, and its use can lead to more accurate and efficient machine learning models.

    What is the Matthews correlation coefficient (MCC) score?

    The Matthews correlation coefficient (MCC) score is a metric used to evaluate the performance of binary classifiers in machine learning. It takes into account all four entries of a confusion matrix (true positives, true negatives, false positives, and false negatives), providing a more representative picture of classifier performance compared to other metrics like F1 score. The MCC score ranges from -1 to 1, where 1 indicates perfect classification, 0 represents random classification, and -1 signifies complete disagreement between the predicted and actual labels.

    What is the Matthews coefficient?

    The Matthews coefficient, also known as the Matthews correlation coefficient (MCC), is a performance metric for binary classifiers in machine learning. It measures the correlation between the predicted and actual binary outcomes, considering all four elements of a confusion matrix. The coefficient ranges from -1 to 1, with 1 indicating perfect classification, 0 representing random classification, and -1 signifying complete disagreement between predictions and actual labels.

    What's a good MCC score?

    A good MCC score depends on the specific problem and the context in which the classifier is being used. Generally, an MCC score closer to 1 indicates better classifier performance, while a score closer to -1 suggests poor performance. A score of 0 implies that the classifier is performing no better than random chance. In practice, an MCC score above 0.3 is considered moderate, and a score above 0.5 is considered strong.

    How does MCC compare to other performance metrics like F1 score?

    MCC is a more comprehensive metric than the F1 score, as it takes into account all four entries of a confusion matrix (true positives, true negatives, false positives, and false negatives). The F1 score, on the other hand, only considers true positives, false positives, and false negatives, ignoring true negatives. This makes MCC a more representative measure of classifier performance, especially in cases where true negatives are important or when the class distribution is imbalanced.

    What are some practical applications of MCC in machine learning?

    MCC has been applied in various domains, including protein gamma-turn prediction, software defect prediction, and medical image analysis. In these applications, MCC has been used to evaluate classifier performance and guide the development of improved models. For example, a deep inception capsule network for gamma-turn prediction achieved an MCC of 0.45, significantly outperforming previous methods. Similarly, a vision transformer model for chest X-ray and gastrointestinal image classification achieved high MCC scores, outperforming various CNN models.

    How can I calculate the Matthews correlation coefficient for my binary classifier?

    To calculate the Matthews correlation coefficient (MCC) for your binary classifier, you need to first obtain the confusion matrix, which consists of true positives (TP), true negatives (TN), false positives (FP), and false negatives (FN). The formula for MCC is: MCC = (TP * TN - FP * FN) / sqrt((TP + FP) * (TP + FN) * (TN + FP) * (TN + FN)) By plugging in the values from your confusion matrix into this formula, you can compute the MCC score for your classifier. This will give you a better understanding of its performance, especially in cases where true negatives are important or when the class distribution is imbalanced.

    MCC Further Reading

    1.The MCC approaches the geometric mean of precision and recall as true negatives approach infinity http://arxiv.org/abs/2305.00594v1 Jon Crall
    2.Improving Protein Gamma-Turn Prediction Using Inception Capsule Networks http://arxiv.org/abs/1806.07341v1 Chao Fang, Yi Shang, Dong Xu
    3.Assessing Software Defection Prediction Performance: Why Using the Matthews Correlation Coefficient Matters http://arxiv.org/abs/2003.01182v1 Jingxiu Yao, Martin Shepperd
    4.A study on cost behaviors of binary classification measures in class-imbalanced problems http://arxiv.org/abs/1403.7100v1 Bao-Gang Hu, Wei-Ming Dong
    5.Wood-leaf classification of tree point cloud based on intensity and geometrical information http://arxiv.org/abs/2108.01002v1 Jingqian Sun, Pei Wang, Zhiyong Gao, Zichu Liu, Yaxin Li, Xiaozheng Gan
    6.A method to segment maps from different modalities using free space layout -- MAORIS : MAp Of RIpples Segmentation http://arxiv.org/abs/1709.09899v2 Malcolm Mielle, Martin Magnusson, Achim J. Lilienthal
    7.PUMiner: Mining Security Posts from Developer Question and Answer Websites with PU Learning http://arxiv.org/abs/2003.03741v1 Triet H. M. Le, David Hin, Roland Croft, M. Ali Babar
    8.Probabilistic prediction of Dst storms one-day-ahead using Full-Disk SoHO Images http://arxiv.org/abs/2203.11001v2 A. Hu, C. Shneider, A. Tiwari, E. Camporeale
    9.Vision Transformer for Efficient Chest X-ray and Gastrointestinal Image Classification http://arxiv.org/abs/2304.11529v1 Smriti Regmi, Aliza Subedi, Ulas Bagci, Debesh Jha
    10.Distributed Stratified Locality Sensitive Hashing for Critical Event Prediction in the Cloud http://arxiv.org/abs/1712.00206v1 Alessandro De Palma, Erik Hemberg, Una-May O'Reilly

    Explore More Machine Learning Terms & Concepts

    MBERT (Multilingual BERT)

    Multilingual BERT (mBERT) enables cross-lingual transfer learning, improving performance in natural language processing tasks across multiple languages. Multilingual BERT, or mBERT, is a language model that has been pre-trained on large multilingual corpora, enabling it to understand and process text in multiple languages. This model has shown impressive capabilities in zero-shot cross-lingual transfer, where it can perform well on tasks such as part-of-speech tagging, named entity recognition, and document classification without being explicitly trained on a specific language. Recent research has explored the intricacies of mBERT, including its ability to encode word-level translations, the complementary properties of its different layers, and its performance on low-resource languages. Studies have also investigated the architectural and linguistic properties that contribute to mBERT's multilinguality, as well as methods for distilling the model into smaller, more efficient versions. One key finding is that mBERT can learn both language-specific and language-neutral components in its representations, which can be useful for tasks like word alignment and sentence retrieval. However, there is still room for improvement in building better language-neutral representations, particularly for tasks requiring linguistic transfer of semantics. Practical applications of mBERT include: 1. Cross-lingual transfer learning: mBERT can be used to train a model on one language and apply it to another language without additional training, enabling developers to create multilingual applications with less effort. 2. Language understanding: mBERT can be employed to analyze and process text in multiple languages, making it suitable for tasks such as sentiment analysis, text classification, and information extraction. 3. Machine translation: mBERT can serve as a foundation for building more advanced machine translation systems that can handle multiple languages, improving translation quality and efficiency. A company case study that demonstrates the power of mBERT is Uppsala NLP, which participated in SemEval-2021 Task 2, a multilingual and cross-lingual word-in-context disambiguation challenge. They used mBERT, along with other pre-trained multilingual language models, to achieve competitive results in both fine-tuning and feature extraction setups. In conclusion, mBERT is a versatile and powerful language model that has shown great potential in cross-lingual transfer learning and multilingual natural language processing tasks. As research continues to explore its capabilities and limitations, mBERT is expected to play a significant role in the development of more advanced and efficient multilingual applications.

    MCMC

    Markov Chain Monte Carlo (MCMC) estimates complex probability distributions, widely used in Bayesian inference and scientific computing for model accuracy. MCMC algorithms work by constructing a Markov chain, a sequence of random variables where each variable depends only on its immediate predecessor. The chain is designed to have a stationary distribution that matches the target distribution of interest. By simulating the chain for a sufficiently long time, we can obtain samples from the target distribution and estimate its properties. However, MCMC practitioners face challenges such as constructing efficient algorithms, finding suitable starting values, assessing convergence, and determining appropriate chain lengths. Recent research has explored various aspects of MCMC, including convergence diagnostics, stochastic gradient MCMC (SGMCMC), multi-level MCMC, non-reversible MCMC, and linchpin variables. SGMCMC algorithms, for instance, use data subsampling techniques to reduce the computational cost per iteration, making them more scalable for large datasets. Multi-level MCMC algorithms, on the other hand, leverage a sequence of increasingly accurate discretizations to improve cost-tolerance complexity compared to single-level MCMC. Some studies have also investigated the convergence time of non-reversible MCMC algorithms, showing that while they can yield more accurate estimators, they may also slow down the convergence of the Markov chain. Linchpin variables, which were largely ignored after the advent of MCMC, have recently gained renewed interest for their potential benefits when used in conjunction with MCMC methods. Practical applications of MCMC span various domains, such as spatial generalized linear models, Bayesian inverse problems, and sampling from energy landscapes with discrete symmetries and energy barriers. For example, in spatial generalized linear models, MCMC can be used to estimate properties of challenging posterior distributions. In Bayesian inverse problems, multi-level MCMC algorithms can provide better cost-tolerance complexity than single-level MCMC. In energy landscapes, group action MCMC (GA-MCMC) can accelerate sampling by exploiting the discrete symmetries of the potential energy function. One company case study involves the use of MCMC in uncertainty quantification for subsurface flow, where a hierarchical multi-level MCMC algorithm was applied to improve the efficiency of the estimation process. This demonstrates the potential of MCMC methods in real-world applications, where they can provide valuable insights and facilitate decision-making. In conclusion, MCMC is a versatile and powerful technique for estimating properties of complex probability distributions. Ongoing research continues to address the challenges and limitations of MCMC, leading to the development of more efficient and scalable algorithms that can be applied to a wide range of problems in science, engineering, and beyond.

    • Weekly AI Newsletter, Read by 40,000+ AI Insiders
cubescubescubescubescubescubes
  • Subscribe to our newsletter for more articles like this
  • deep lake database

    Deep Lake. Database for AI.

    • Solutions
      AgricultureAudio ProcessingAutonomous Vehicles & RoboticsBiomedical & HealthcareMultimediaSafety & Security
    • Company
      AboutContact UsCareersPrivacy PolicyDo Not SellTerms & Conditions
    • Resources
      BlogDocumentationDeep Lake WhitepaperDeep Lake Academic Paper
  • Tensie

    Featured by

    featuredfeaturedfeaturedfeatured
    • © 2025 Activeloop. All rights reserved.